PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g14980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family RAV
Protein Properties Length: 345aa    MW: 38691.4 Da    PI: 9.8608
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g14980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-1364112155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  Tp2g14980  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAHRFRG 112
                689***9788.8*********3.....5**********99************998 PP

2B3100.78.4e-32191295199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk+ ae+h      + ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++++l++
  Tp2g14980 191 FEKAVTPSDVGKLNRLVIPKHQAEKHfplpltDDVSVRGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQDQQLYI 290
                89******************************88999****************************************************98779999999 PP

                EEE-S CS
         B3  95 kvfrk 99 
                ++ +k
  Tp2g14980 291 GWKSK 295
                99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-864112IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-1764121IPR016177DNA-binding domain
CDDcd000181.69E-2464121No hitNo description
SMARTSM003808.8E-2865126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1965120IPR001471AP2/ERF domain
PROSITE profilePS5103219.98165120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-38183297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-29188296IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-27190283No hitNo description
SMARTSM010191.7E-25191296IPR003340B3 DNA binding domain
PROSITE profilePS5086313.648191296IPR003340B3 DNA binding domain
PfamPF023628.4E-28191295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDAVSSVDES STSTYSIHTP AKMAPATARK SSAPASLYRM GSGSSVVLDS DNGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDIAAHRF RGRDAVTNFK  120
AEMASGNGDE EEVDFLNGHS KSEIVDMLRK HTYKEELEQR KRNREGNGTT KETAFTAVTA  180
ATGFKSAESL FEKAVTPSDV GKLNRLVIPK HQAEKHFPLP LTDDVSVRGM LLNFEDVNGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKEKRL CAGDLISFKR SNGQDQQLYI GWKSKSGSDH  300
DTGRIVMRLF GVDISSAKSR NDVVVKEETE MLSLRCNKKQ RLRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-6818730210124DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644813.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS060.0RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLV4MMZ00.0V4MMZ0_EUTSA; Uncharacterized protein
STRINGBra026509.1-P0.0(Brassica rapa)
STRINGBra025159.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-175related to ABI3/VP1 1